what is PubChem MCP Server?
The PubChem MCP Server is a tool designed to extract basic chemical information about drugs from the PubChem API.
how to use PubChem MCP Server?
To use the PubChem MCP Server, clone the repository, install the dependencies, and configure the server settings in the servers_config.json file. You can then run the server to retrieve drug information.
key features of PubChem MCP Server?
- Extracts detailed chemical information from the PubChem database.
- Supports multiple server configurations for flexibility.
- Provides results in a structured JSON format.
use cases of PubChem MCP Server?
- Retrieving chemical properties of various drugs for research purposes.
- Integrating drug information into applications for healthcare professionals.
- Assisting in drug discovery and development processes.
FAQ from PubChem MCP Server?
- What programming language is used for the PubChem MCP Server?
The server is built using Python 3.10.
- How can I install the PubChem MCP Server?
You can install it by cloning the repository and running the installation commands provided in the documentation.
- Can I configure multiple servers?
Yes! The
servers_config.jsonallows for easy integration of multiple servers.
pubchem mcp server
the mcp is used to extract the drug basic chemical infomation from pubchem API.
Requirements
- Python 3.10
python-dotenvrequestsmcpuvicorn
Installation
Install the dependencies(local):
- Install directly from the project directory
git clone [project repository URL]
cd [project directory]
pip install .
Configure servers(pypi):
The servers_config.json follows the same structure as Claude Desktop, allowing for easy integration of multiple servers.
Here's an example:
{
"mcpServers": {
"pubchem": {
"command": "uvx",
"args": ["pubchem_mcp_server"]
}
}
}
the result of this MCP
{
"Drug Name": "Aspirin",
"CAS Number": "50-78-2",
"Molecular Weight": 180.16,
"Molecular Formula": "C9H8O4",
"SMILES": "CC(=O)OC1=CC=CC=C1C(=O)O",
"Synonyms": [
"2-(Acetyloxy)benzoic Acid",
"Acetylsalicylic Acid",
"Acetysal",
"Acylpyrin",
"Aloxiprimum",
"Aspirin",
"Colfarit",
"Dispril",
"Easprin"
],
"InchI Key": "BSYNRYMUTXBXSQ-UHFFFAOYSA-N",
"IUPAC Name": "2-acetyloxybenzoic acid",
"ATC Code": "N02BA01",
"Details Link": "https://pubchem.ncbi.nlm.nih.gov/compound/2244"
}
