PubChem MCP Server
Enables large language models to correctly query molecular databases and generate structure files
what is PubChem MCP Server?
PubChem MCP Server is a Model Context Protocol (MCP) server designed to acquire and manage data from the PubChem molecular database, allowing users to query chemical compounds efficiently.
how to use PubChem MCP Server?
To use the PubChem MCP Server, install it via npm and configure it in your MCP configuration file. You can then use the provided tools to query compound data by name or CID.
key features of PubChem MCP Server?
- Support for querying by compound name or CID
- Multiple output formats: JSON, CSV, XYZ
- 3D structure data acquisition and conversion
- Local caching system to minimize API calls
- Automatic retry mechanism for improved reliability
use cases of PubChem MCP Server?
- Retrieving structural and property data for chemical compounds.
- Converting chemical data into various formats for analysis.
- Accessing 3D structure data for visualization in chemical software.
FAQ from PubChem MCP Server?
- What types of data can I retrieve?
You can retrieve structural and property data for various chemical compounds in different formats.
- Is there a limit to the number of queries?
The server supports multiple queries, but be mindful of API rate limits.
- How do I cache data?
The server automatically caches attribute data in memory and 3D structure data in a specified directory.
what is PubChem MCP Server?
PubChem MCP Server is a Model Context Protocol (MCP) server designed to acquire and manage data from the PubChem molecular database, allowing users to query chemical compounds efficiently.
how to use PubChem MCP Server?
To use the PubChem MCP Server, install it via npm and configure it in your MCP configuration file. You can then use the provided tools to query compound data by name or CID.
key features of PubChem MCP Server?
- Support for querying by compound name or CID
- Multiple output formats: JSON, CSV, XYZ
- 3D structure data acquisition and conversion
- Local caching system to minimize API calls
- Automatic retry mechanism for improved reliability
use cases of PubChem MCP Server?
- Retrieving structural and property data for chemical compounds.
- Converting chemical data into various formats for analysis.
- Accessing 3D structure data for visualization in chemical software.
FAQ from PubChem MCP Server?
- What types of data can I retrieve?
You can retrieve structural and property data for various chemical compounds in different formats.
- Is there a limit to the number of queries?
The server supports multiple queries, but be mindful of API rate limits.
- How do I cache data?
The server automatically caches attribute data in memory and 3D structure data in a specified directory.